PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast02G325400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 336aa    MW: 36878.3 Da    PI: 7.3408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast02G325400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51251552128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pG+rFhPtdeelv++yL++kv+gk+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++
  Brast02G325400.1.p  25 LPGYRFHPTDEELVTFYLRRKVAGKPLSI-EVIREMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRP 114
                         69***************************.99***************445556889*********************************** PP

                 NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s+    +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Brast02G325400.1.p 115 IYSAaaasSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 155
                         ***988888889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-5723181IPR003441NAC domain
PROSITE profilePS5100555.78624181IPR003441NAC domain
PfamPF023658.0E-2526155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEKVKNNGEV VLGARDGEED DAAVLPGYRF HPTDEELVTF YLRRKVAGKP LSIEVIREMD  60
IYKHDPWDLP KASTVGGEKE WYFFCLRGRK YRNSIRPNRV TGSGFWKATG IDRPIYSAAA  120
ASSGESIGLK KSLVYYRGSA GKGTKTDWMM HEFRLPAAAA ANASPSMQEA EVWTICRIFR  180
RNVTYRKQQT WRPPPPAAAS TAVAADSSSN TAGSFESSDG GGDDYMAPAA TTAPPCIIPH  240
QQQQHNGTLH LGAANGGFFG QHFQGQWNSV PPPAPPLPDQ KPLNPASAPI AFHQNDHSLA  300
AANDFYKVEG YLEEIARMME VTDPHPAAVY DYRYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-512618719171NO APICAL MERISTEM PROTEIN
1ut4_B3e-512618719171NO APICAL MERISTEM PROTEIN
1ut7_A3e-512618719171NO APICAL MERISTEM PROTEIN
1ut7_B3e-512618719171NO APICAL MERISTEM PROTEIN
3swm_A3e-512618722174NAC domain-containing protein 19
3swm_B3e-512618722174NAC domain-containing protein 19
3swm_C3e-512618722174NAC domain-containing protein 19
3swm_D3e-512618722174NAC domain-containing protein 19
3swp_A3e-512618722174NAC domain-containing protein 19
3swp_B3e-512618722174NAC domain-containing protein 19
3swp_C3e-512618722174NAC domain-containing protein 19
3swp_D3e-512618722174NAC domain-containing protein 19
4dul_A3e-512618719171NAC domain-containing protein 19
4dul_B3e-512618719171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3604321e-171AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559373.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-84NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0Q3GPL50.0A0A0Q3GPL5_BRADI; Uncharacterized protein
STRINGBRADI1G06970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-81NAC domain containing protein 42